org.bioworks.components.discovery
Class SequenceDiscoveryViewWidget

java.lang.Object
  java.awt.Component
      java.awt.Container
          javax.swing.JComponent
              javax.swing.JPanel
                  org.bioworks.components.discovery.SequenceDiscoveryViewWidget

All Implemented Interfaces:

javax.accessibility.Accessible, java.util.EventListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.beans.PropertyChangeListener, java.io.Serializable, StatusChangeListener

public class SequenceDiscoveryViewWidget

extends javax.swing.JPanel

implements StatusChangeListener, java.beans.PropertyChangeListener, java.io.Serializable

This class services the needs of different algorithms. It enables them to use a "GUI template" for displaying the progress/status of a computation and for displaying the transformation of their input data. Each algorithm instance is associated with a "view" (Note: there is a one to many mapping btwn algorithms and a particular view). A view is a graphical represenation of the Algorithm result set. For an algorithm to display its results, a DataSource is attached to a model of the corresponding view. The Datasource contains the algorithm's result. Communications: viewer - model: defined by these components. viewer - SequenceDiscoveryViewWidget: through property changes model - Algorithm's DataSource: as defined by the model interface SequenceDiscoveryViewWidgetAppComponent- SequenceDiscoveryViewWidget: through property changes.

Copyright: Copyright (c) 2003

Company: Califano Lab

Version:

1.0

Author:

See Also:

Serialized Form

Nested Class Summary

Nested classes inherited from class javax.swing.JPanel

javax.swing.JPanel.AccessibleJPanel

Nested classes inherited from class javax.swing.JComponent

javax.swing.JComponent.AccessibleJComponent

Nested classes inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Nested classes inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

(package private) javax.swing.Box	box1
(package private) javax.swing.JButton	executeButton
(package private) javax.swing.JButton	loadBttn
static java.lang.String	PARAMETERS
static java.lang.String	PATTERN_DB
(package private) javax.swing.JButton	stopButton
static java.lang.String	TABLE_EVENT
(package private) javax.swing.border.TitledBorder	titledBorder4
static java.lang.String	TREE_EVENT

Fields inherited from class javax.swing.JComponent

accessibleContext, listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Container

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

SequenceDiscoveryViewWidget()

Method Summary

AbstractSequenceDiscoveryAlgorithm	exhaustive_actionPerformed(Session session) Exhaustive
polgara.soapPD_wsdl.Parameters	getParameters()
SequenceDB	getSequenceDB()
SequenceDiscoveryViewAppComponent	getSequenceDiscoveryViewAppComponent()
AbstractSequenceDiscoveryAlgorithm	hierarc_actionPerformed(Session session) Hiearchical discovery.
void	jbInit()
(package private) void	loadBttn_actionPerformed(java.awt.event.ActionEvent e)
void	progressBarChanged(ProgressBarEvent evt) The method updates the progress bar.
void	propertyChange(java.beans.PropertyChangeEvent evt) The views communicate with this widget through property changes.
void	setSequenceDB(SequenceDB sDB)
void	setSequenceDiscoveryViewAppComponent(SequenceDiscoveryViewAppComponent s)
void	statusBarChanged(StatusBarEvent evt) The method updates the Status bar.
void	viewResult(Session session) The function display the result of the session.

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addPropertyChangeListener, addPropertyChangeListener, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBorder, getBounds, getClientProperty, getComponentGraphics, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getGraphics, getHeight, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPreferredSize, getPropertyChangeListeners, getPropertyChangeListeners, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isMaximumSizeSet, isMinimumSizeSet, isOpaque, isOptimizedDrawingEnabled, isPaintingTile, isPreferredSizeSet, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removePropertyChangeListener, removePropertyChangeListener, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFont, setForeground, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setFocusCycleRoot, setFocusTraversalKeys, setFocusTraversalPolicy, setLayout, transferFocusBackward, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMouseWheelListeners, getName, getParent, getPeer, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

PATTERN_DB

public static final java.lang.String PATTERN_DB

See Also:

Constant Field Values

PARAMETERS

public static final java.lang.String PARAMETERS

See Also:

Constant Field Values

TABLE_EVENT

public static final java.lang.String TABLE_EVENT

See Also:

Constant Field Values

TREE_EVENT

public static final java.lang.String TREE_EVENT

See Also:

Constant Field Values

executeButton

javax.swing.JButton executeButton

stopButton

javax.swing.JButton stopButton

titledBorder4

javax.swing.border.TitledBorder titledBorder4

box1

javax.swing.Box box1

loadBttn

javax.swing.JButton loadBttn

Constructor Detail

SequenceDiscoveryViewWidget

public SequenceDiscoveryViewWidget()
                            throws java.lang.Exception

Method Detail

jbInit

public void jbInit()
            throws java.lang.Exception

Throws:

java.lang.Exception

progressBarChanged

public void progressBarChanged(ProgressBarEvent evt)

The method updates the progress bar. It is called by the different algorithms.

Specified by:

progressBarChanged in interface StatusChangeListener

Parameters:

evt - the event for updating the progress bar.

See Also:

ProgressBarEvent.

statusBarChanged

public void statusBarChanged(StatusBarEvent evt)

The method updates the Status bar. It is called by the different algorithms.

Specified by:

statusBarChanged in interface StatusChangeListener

Parameters:

evt - the event for updating the status bar.

See Also:

StatusBarEvent.

propertyChange

public void propertyChange(java.beans.PropertyChangeEvent evt)

The views communicate with this widget through property changes.

Specified by:

propertyChange in interface java.beans.PropertyChangeListener

Parameters:

evt -

viewResult

public void viewResult(Session session)

The function display the result of the session.

Parameters:

session - Session

exhaustive_actionPerformed

public AbstractSequenceDiscoveryAlgorithm exhaustive_actionPerformed(Session session)

Exhaustive

hierarc_actionPerformed

public AbstractSequenceDiscoveryAlgorithm hierarc_actionPerformed(Session session)

Hiearchical discovery.

setSequenceDB

public void setSequenceDB(SequenceDB sDB)

getSequenceDB

public SequenceDB getSequenceDB()

setSequenceDiscoveryViewAppComponent

public void setSequenceDiscoveryViewAppComponent(SequenceDiscoveryViewAppComponent s)

getSequenceDiscoveryViewAppComponent

public SequenceDiscoveryViewAppComponent getSequenceDiscoveryViewAppComponent()

getParameters

public polgara.soapPD_wsdl.Parameters getParameters()

loadBttn_actionPerformed

void loadBttn_actionPerformed(java.awt.event.ActionEvent e)