Readme.txt
    
                          caWorkbench
                          Version 3.0
                         June 21, 2005
    
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                            Contents
================================================================
    
    1.0 Introduction and Installation
    2.0 Samples
    3.0 Security Note
    4.0 License
    
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                        1.0 Introduction and Installation
================================================================
    
    This distribution consists of source codes and external libraries for 
	caWorkbench version 3.0.
	
	JDK5.0 or later is needed to run caWorkbench. 
	 
	To run it directly, just use the scripts provided: 
		runCaW3Direct.bat or runCaW3Direct.sh
		Please add "java" command to your PATH variable. 
		 
	To compile the source code, Ant is required. 
		use "ant compile" to compile source codes.
		use "ant run" or "ant" to run the application.
		After you compiled the code, you also can use script 
		runCaW3.bat or runCaW3.sh to start the application.
		 
		
		
		Please modify the build.xml line 3: 
			<property name="jdk.home" value="C:/jdk1.5.0"/>
	   	Point the correct location of your jdk home. You may need
	   	set your JAVA_HOME property to correct place too.
		Please make sure  correct version of java is used.JDK1.4 or earlier cannot run
		the application.
	   
    For more information, please visit our website:
     
	http://amdec-bioinfo.cu-genome.org/html/caWorkBench.htm

    
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                       2.0 Samples
================================================================

    Gene Expression Data:     
	Affy_sample.txt:  Microarray data from a single Affy chip.
	Webmatrix.exp:  Microarray data from multiple Affy chips.
	Genepix_sample.gpr: Microarray data from Genepix chip.
	 	


    
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                   3.0 Security Note
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       A java security policy is required to make calls against the
    caBIO server because the caBIO.jar uses Java RMI (Remote
    Method Invocation) calls to connect with the caBIO server.
    The policies defined in a java.policy file which can be found in 
	same folder as this README file. It is for the protection of 
	your system--not the caBIO server. Therefore,  you are 
	free (and encouraged) to edit the java.policy file
    as appropriate for your system. For more information, see:
    
        - http://java.sun.com/security/
    	
    

================================================================
                   4.0 Interim Release Status
================================================================
    
    This code is not for redistribution - it constitutes an interim
    release for NCI use only. Appropriate license language will be
    added at the actual release.

 	
    
    
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