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Sequence
and Motif Databases - Summary
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A detailed directory and file layout
of the genome databases on the BlastMachine and UNIX
fileserver is available here.
| Database Type |
Name |
Version
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Release Date |
Comments |
| Motif |
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Pfam |
16
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November 2004 |
GM2 Queryset |
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| Sequence Collections |
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NCBI BlastDB |
current |
updated weekly |
multiple database
files |
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TIGR |
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updated infrequently |
multiple database
files |
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EMBL IPI |
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multiple database
files |
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| GoldenPath
Genomes |
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Human |
hg17
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May 2004 |
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Human |
hg13
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November 2002 |
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Mouse |
mm3
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February 2003 |
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Rat |
rn3
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June 2003
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SARS |
sc1
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April 2003 |
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| Other
Genomes |
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Tetraodon |
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May 2002 |
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Anopeheles |
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Bacterial |
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Numerous, see
list |
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C. elegans |
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Ciona |
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Drosophila |
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Fugu |
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Yeast |
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Zebra Fish |
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