############################### ## THE FILE ### ############################### - BCI.txt : describes the Interations from the B cell Interactome. Three type of interactions are describe: ppi for protein-protein interactions, pdi for protein-DNA interactions and tfmi for transcription factor-modulator interactions (identified by the algorithm MINDy). ############################### ## THE FORMAT ### ############################### BCI.txt is tab-delimited and contains 7 columns: - Entrez Gene ID 1 (Transcription Factor if PDI) - Gene Name 1 - Entrez Gene ID 2 (Target if PDI, Modulator if TFMI) - Gene Name 2 - Interaction Type (ppi, pdi, tfmi) - If pdi and ppi : Probability, as computed with a Naive Bayes Classifier or 0 if the interaction was not detected by this method but is described in at least one of the public databases used in this analysis. If tfmi: number of TF's targets modulated by this modulator. - Type: 1 if the interaction is reported in a public database, 0 otherwise.